Search for tag: "bioinformatics"

21 Media

Course content overview 2018 boot camp duration 5 minutes 41 seconds Course content overview 2018 boot camp Course content overview 2018 boot camp	Course content overview 2018 boot camp This is an overview of the topics to be covered in the Purdue Summer boot camp on big data training for biomedical researchers. bioinformatics education bigtap From James C Fleet 66 plays 0
Transcription Factor Binding Site Prediction in… duration 12 minutes 22 seconds Transcription Factor Binding Site Prediction in… Transcription Factor Binding Site Prediction in DNA	Transcription Factor Binding Site Prediction in DNA In this video we explain the concepts for searching DNA to find transcription factor binding sites. This includes a discussion of databases and tools as well as a demonstration of a simple tool… bigtap bioinformatics genomics data visualization education From James C Fleet 783 plays 0
Using IGV to visualize DNA-seq data duration 14 minutes 34 seconds Using IGV to visualize DNA-seq data Using IGV to visualize DNA-seq data	Using IGV to visualize DNA-seq data In this video we use IGV to visualize DNA-seq data. The demonstration uses date from the ENCODE project as well as BED file made from supplemental data in a published paper. bigtap genomics visualization education bioinformatics From James C Fleet 241 plays 0
Overview of ENCODE duration 9 minutes 52 seconds Overview of ENCODE Overview of ENCODE	Overview of ENCODE This video provides an overview of the ENCODE project and tours through the ENCODE data portal. bigta genomics education bioinformatics From James C Fleet 84 plays 0
1080 Getting Started With Jupyter duration 10 minutes 17 seconds 1080 Getting Started With Jupyter 1080 Getting Started With Jupyter	1080 Getting Started With Jupyter This video explains how Jupyter notebooks work and how to use them. It is an essential prelude to the BigTap On-line course. bigtap bioinformatics education computing From James C Fleet 178 plays 0
Getting started with Jupyter notebooks duration 10 minutes 17 seconds Getting started with Jupyter notebooks Getting started with Jupyter notebooks	Getting started with Jupyter notebooks This video provides an overview of how to open, navigate, edit, save, restart, and close Jupyter notebooks for the BigTap on-line course. bigtap education bioinformatics computing From James C Fleet 177 plays 0
Course Resources duration 16 minutes 10 seconds Course Resources Course Resources	Course Resources This is a brief overview of the four major course resources that students will use in the BigTap on-line course. bigtap education bioinformatics From James C Fleet 223 plays 0
Functional Assessment of genomic data 1-2-18 duration 11 minutes 5 seconds Functional Assessment of genomic data 1-2-18 Functional Assessment of genomic data 1-2-18	Functional Assessment of genomic data 1-2-18 This video provides an overview of tools that are available to understand the relationship between your deferentially expressed gene list and biological functions. Within the video are links to… bigtap bioinformatics genomics education From James C Fleet 183 plays 0
Gene Set Enrichment Analysis demonstration duration 13 minutes 34 seconds Gene Set Enrichment Analysis demonstration Gene Set Enrichment Analysis demonstration	Gene Set Enrichment Analysis demonstration This is a demonstration on how to use the desktop version of the the Gene Set Enrichment Analysis (aka GSEA) software to analyze genomics studies. GSEA links biological datasets to genesets of… bigtap bioinformatics tutorial education genomics From James C Fleet 729 plays 0
Unit 1 online course introduction 1-2-18 duration 4 minutes 2 seconds Unit 1 online course introduction 1-2-18 Unit 1 online course introduction 1-2-18	Unit 1 online course introduction 1-2-18 This short video presents the content that will be taught and the skill reinforcing exercises that make up Unit 1 of the BigTap on-line course. bigtap bioinformatics genomics education From James C Fleet 216 plays 0
Making sense of candidate genes identified in… duration 10 minutes 33 seconds Making sense of candidate genes identified in… Making sense of candidate genes identified in omics analysis	Making sense of candidate genes identified in omics analysis The purpose of this video is to introduce three tools that can be used to understand candidate genes that are identified in omic analysis: BioGPS, Genecards, and Coremine bigtap bioinformatics genomics From James C Fleet 124 plays 0
Public databases, GEO introduction, and GEO2R… duration 9 minutes 17 seconds Public databases, GEO introduction, and GEO2R… Public databases, GEO introduction, and GEO2R demonstration	Public databases, GEO introduction, and GEO2R demonstration Here we discuss the public databases and repositories that exist for genomic and other omic data. We'll focus on the Gene Expression Omnibus and show how a tool on that site - GEO2R - can be… bigtap genomics microarray bioinformatics From James C Fleet 551 plays 0
Affy dataset overview for the Microarray exercise duration 6 minutes 8 seconds Affy dataset overview for the Microarray exercise Affy dataset overview for the Microarray exercise	Affy dataset overview for the Microarray exercise This video describes the Affymetrix dataset that will be used during the hands-on exercise for the on-line course. In addition, it explains the analysis pipeline used in the original report of the… bigtap microarray bioinformatics From James C Fleet 163 plays 0
Statistical Issues for differential gene… duration 3 minutes 31 seconds Statistical Issues for differential gene… Statistical Issues for differential gene expression using next generation sequencing data	Statistical Issues for differential gene expression using next generation sequencing data This video examines the special statistical challenges that exist for comparing samples from next generation sequencing (NGS) studies. bigtap bioinformatics genomics next generation sequencing statistics From James C Fleet 116 plays 0
RNA-seq dataset used in on-line course duration 4 minutes 6 seconds RNA-seq dataset used in on-line course RNA-seq dataset used in on-line course	RNA-seq dataset used in on-line course This is an overview of the experiment we used for the RNA-seq analysis demonstration for the on-line course. rna bioinformatics bigtap From James C Fleet 87 plays 0
Next generation sequencing and RNA-seq analysis duration 10 minutes 26 seconds Next generation sequencing and RNA-seq analysis Next generation sequencing and RNA-seq analysis	Next generation sequencing and RNA-seq analysis Here we examine the tool of next generation sequencing (NGS) and how it can be used to measure the transcript profile of a biological sample (i.e. RNA-seq). Some basic concepts related to sequencing… bioinformatics bigtap genomics next generation sequencing rna From James C Fleet 223 plays 0