Search for tag: "genomics"

19 Media

Transcription Factor Binding Site Prediction in… duration 12 minutes 22 seconds Transcription Factor Binding Site Prediction in… Transcription Factor Binding Site Prediction in DNA	Transcription Factor Binding Site Prediction in DNA In this video we explain the concepts for searching DNA to find transcription factor binding sites. This includes a discussion of databases and tools as well as a demonstration of a simple tool… bigtap bioinformatics genomics data visualization education From James C Fleet 783 plays 0
Using IGV to visualize DNA-seq data duration 14 minutes 34 seconds Using IGV to visualize DNA-seq data Using IGV to visualize DNA-seq data	Using IGV to visualize DNA-seq data In this video we use IGV to visualize DNA-seq data. The demonstration uses date from the ENCODE project as well as BED file made from supplemental data in a published paper. bigtap genomics visualization education bioinformatics From James C Fleet 241 plays 0
Overview of ENCODE duration 9 minutes 52 seconds Overview of ENCODE Overview of ENCODE	Overview of ENCODE This video provides an overview of the ENCODE project and tours through the ENCODE data portal. bigta genomics education bioinformatics From James C Fleet 84 plays 0
An introduction to IGV and its use for… duration 17 minutes 12 seconds An introduction to IGV and its use for… An introduction to IGV and its use for visualizaing RNA-seq data	An introduction to IGV and its use for visualizaing RNA-seq data This video has two purposes. First, it is an introduction to the Integrative Genomics Viewer (IGV). Afterwards we demonstrate how IGV can be used to visualize RNA-seq data. bigtap genomics education visualization From James C Fleet 2,021 plays 0
Unit 2 Overview for Online Course 2018 duration 4 minutes 16 seconds Unit 2 Overview for Online Course 2018 Unit 2 Overview for Online Course 2018	Unit 2 Overview for Online Course 2018 This video presents an overview of the topics that will be covered in Unit 2 of the BigTap online course. bigtap education genomics next generation sequencing From James C Fleet 105 plays 0
Hierarchical clustering and heatmaps in… duration 16 minutes 40 seconds Hierarchical clustering and heatmaps in… Hierarchical clustering and heatmaps in GenePattern	Hierarchical clustering and heatmaps in GenePattern This video introduces the GenePattern repository of user friendly bioinformatic tools. Afterwards we use GenePattern to make and visualize hierarchical clusters and heatmaps using trancriptome data. bigtap genomics visualization tutorial education From James C Fleet 334 plays 0
Functional Assessment of genomic data 1-2-18 duration 11 minutes 5 seconds Functional Assessment of genomic data 1-2-18 Functional Assessment of genomic data 1-2-18	Functional Assessment of genomic data 1-2-18 This video provides an overview of tools that are available to understand the relationship between your deferentially expressed gene list and biological functions. Within the video are links to… bigtap bioinformatics genomics education From James C Fleet 183 plays 0
Gene Set Enrichment Analysis demonstration duration 13 minutes 34 seconds Gene Set Enrichment Analysis demonstration Gene Set Enrichment Analysis demonstration	Gene Set Enrichment Analysis demonstration This is a demonstration on how to use the desktop version of the the Gene Set Enrichment Analysis (aka GSEA) software to analyze genomics studies. GSEA links biological datasets to genesets of… bigtap bioinformatics tutorial education genomics From James C Fleet 729 plays 0
Unit 1 online course introduction 1-2-18 duration 4 minutes 2 seconds Unit 1 online course introduction 1-2-18 Unit 1 online course introduction 1-2-18	Unit 1 online course introduction 1-2-18 This short video presents the content that will be taught and the skill reinforcing exercises that make up Unit 1 of the BigTap on-line course. bigtap bioinformatics genomics education From James C Fleet 216 plays 0
Making sense of candidate genes identified in… duration 10 minutes 33 seconds Making sense of candidate genes identified in… Making sense of candidate genes identified in omics analysis	Making sense of candidate genes identified in omics analysis The purpose of this video is to introduce three tools that can be used to understand candidate genes that are identified in omic analysis: BioGPS, Genecards, and Coremine bigtap bioinformatics genomics From James C Fleet 124 plays 0
Public databases, GEO introduction, and GEO2R… duration 9 minutes 17 seconds Public databases, GEO introduction, and GEO2R… Public databases, GEO introduction, and GEO2R demonstration	Public databases, GEO introduction, and GEO2R demonstration Here we discuss the public databases and repositories that exist for genomic and other omic data. We'll focus on the Gene Expression Omnibus and show how a tool on that site - GEO2R - can be… bigtap genomics microarray bioinformatics From James C Fleet 551 plays 0
Statistical Issues for differential gene… duration 3 minutes 31 seconds Statistical Issues for differential gene… Statistical Issues for differential gene expression using next generation sequencing data	Statistical Issues for differential gene expression using next generation sequencing data This video examines the special statistical challenges that exist for comparing samples from next generation sequencing (NGS) studies. bigtap bioinformatics genomics next generation sequencing statistics From James C Fleet 116 plays 0
Next generation sequencing and RNA-seq analysis duration 10 minutes 26 seconds Next generation sequencing and RNA-seq analysis Next generation sequencing and RNA-seq analysis	Next generation sequencing and RNA-seq analysis Here we examine the tool of next generation sequencing (NGS) and how it can be used to measure the transcript profile of a biological sample (i.e. RNA-seq). Some basic concepts related to sequencing… bioinformatics bigtap genomics next generation sequencing rna From James C Fleet 223 plays 0
DNA-seq dataset description for on-line course duration 4 minutes 37 seconds DNA-seq dataset description for on-line course DNA-seq dataset description for on-line course	DNA-seq dataset description for on-line course This is a description of the experiment and paper that we used in our on-line course to demonstrate how to analyze a DNA-Seq study. genomics bigtap dna next generation sequencing From James C Fleet 66 plays 0
DNA-seq applications overview duration 6 minutes 33 seconds DNA-seq applications overview DNA-seq applications overview	DNA-seq applications overview This video discusses the use of next generation sequencing (NGS) to study DNA. It focuses on the concepts important for understanding the protein-DNA interactions that control gene transcription and… bioinformatics bigtap genomics next generation sequencing dna From James C Fleet 115 plays 0
Statistical Issues for differential gene… duration 8 minutes 12 seconds Statistical Issues for differential gene… Statistical Issues for differential gene expression using microarrays	Statistical Issues for differential gene expression using microarrays Here we review some basic statistical principles for defining differences between treatment groups. We extend that to address the statistical challenge that comes from doing thousands of comparisons… bigtap statistics bioinformatics genomics From James C Fleet 174 plays 0