Search for tag: "visualization"

Fall 2020 - ENGL421 - Weech

From  Shelton Weech 10 plays 0  

Fundamentals of Geolocation Data Projection

From  Chao Cai 12 plays 0  

Fundamentals of Geolocation Data Scale

From  Chao Cai 6 plays 0  

Steps for Cleaning Data

From  Chao Cai 31 plays 0  

Data Attributes

From  Chao Cai 24 plays 0  

Visualization 2: Creating Human Readable and Precise Visualizations

From  Chao Cai 30 plays 0  

Visualization: Critical Thinking for Design

From  Chao Cai 49 plays 0  

Transcription Factor Binding Site Prediction in DNA

In this video we explain the concepts for searching DNA to find transcription factor binding sites. This includes a discussion of databases and tools as well as a demonstration of a simple tool…

From  James C Fleet 783 plays 0  

Using IGV to visualize DNA-seq data

In this video we use IGV to visualize DNA-seq data. The demonstration uses date from the ENCODE project as well as BED file made from supplemental data in a published paper.

From  James C Fleet 240 plays 0  

An introduction to IGV and its use for visualizaing RNA-seq data

This video has two purposes. First, it is an introduction to the Integrative Genomics Viewer (IGV). Afterwards we demonstrate how IGV can be used to visualize RNA-seq data.

From  James C Fleet 2,006 plays 0  

Hierarchical clustering and heatmaps in GenePattern

This video introduces the GenePattern repository of user friendly bioinformatic tools. Afterwards we use GenePattern to make and visualize hierarchical clusters and heatmaps using trancriptome data.

From  James C Fleet 334 plays 0  

Demonstration of IPA software

Here we give a brief demonstration of the capabilities of the commercial pathway and network analysis program, Ingenuity Pathway Analysis or IPA.

From  James C Fleet 144 plays 0  

Clustering Concepts

This video provides an overview of clustering as a visualization technique. It discusses hierarchical clustering, heat maps, and K means clustering.

From  James C Fleet 152 plays 0