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In this video we explain the concepts for searching DNA to find transcription factor binding sites. This includes a discussion of databases and tools as well as a demonstration of a simple tool…
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In this video we use IGV to visualize DNA-seq data. The demonstration uses date from the ENCODE project as well as BED file made from supplemental data in a published paper.
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This video has two purposes. First, it is an introduction to the Integrative Genomics Viewer (IGV). Afterwards we demonstrate how IGV can be used to visualize RNA-seq data.
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This video introduces the GenePattern repository of user friendly bioinformatic tools. Afterwards we use GenePattern to make and visualize hierarchical clusters and heatmaps using trancriptome data.
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Here we give a brief demonstration of the capabilities of the commercial pathway and network analysis program, Ingenuity Pathway Analysis or IPA.
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This video provides an overview of clustering as a visualization technique. It discusses hierarchical clustering, heat maps, and K means clustering.
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